Setting a GOTM-FABM configuration with 'ows_papa'

Summary

• 'make' is sufficient ('make run_all' or 'make ows_papa' did not work).
• 
  

Details

make run_all

make: *** No rule to make target `run_all'.  Stop.

make ows_papa

make: *** No rule to make target `ows_papa'.  Stop.

make

~/editscenario/editscenario.py --skipvalidation -e nml --schemadir=/HOME/hakase/GOTM/gotm-git/gui.py/schemas/scenario/ ows_papa.xml . --targetversion=gotm-4.1.0

Operating on values file with version gotm-4.1.0.

Exporting values to namelist file(s) /HOME/hakase/GOTM/gotm-git/gotm-cases/ows_papa...

running gotm

gotm 2> log.ows_papa

make: *** [run] Error 127

head log.ows_papa

/bin/sh: 1: gotm: not found

ls

airsea.nml     gotmturb.nml      obs.nml       swr.dat

bio.nml        heatflux.dat      ows_papa.xml     swr_file.dat

fabm.nml       heatflux.dat.kb      README       timestamp

filelist       heatflux_file.dat      seagrass.nml     tprof.dat

gotm       log.ows_papa      sprof.dat        t_prof_file.dat

gotm_fabm.nml  Makefile      s_prof_file.dat

gotmmean.nml   momentumflux.dat       sst.dat

gotmrun.nml    momentumflux_file.dat  sst_file.dat

In addition to the namelist files generated by 'make' command, you need to have two namelist files in red above.

In 'fabm.nml', you provide the parameters for your ecosystem model (for this preliminary run, I copied the Fasham (1990) model from '~/FABM/fabm-git/testcases/fabm-gotm-fasham.nml' and renamed it to 'fabm.nml'. If you want to use more than one model at one run, you can combine the multiple namelist files into one (and name it 'fabm.nml'). In such case, make sure that all the models you want to use for the run are defined at the beginning of the file:

&fabm_nml

   models = 'gotm_fasham','gotm_npzd','gotm_npzd'

/

In the above example, three models will be run with one simulation of GOTM (physical model). The NPZD model in red is added twice since I wanted to run the same model with two different sets of parameters (extremely useful for sensitivity experiments). Refer to '0d' test case for further information.

In 'gotm_fabm.nml', you make several model choices (e.g. ODE scheme, advection scheme, etc.). You obtain this file from '~/FABM/fabm-git/testcases/GOTM/gotm_fabm.nml' and paste in your GOTM working directory (in this case, '~/GOTM/gotm-git/gotm-cases/ows_papa'). Make sure that 'fabm_calc' is set to '.true.' to activate the FABM.

GOTM is now coupled to FABM.              Great!